The primary structures of three major species of human leukocyte. interferon differ from the structure predicted from the DNA sequence of recombinants containing leukocyte interferon-coding regions. Compared to the recombinant interferon produced in bacteria, three of the purified natural proteins isolated from leukocytes lack the 10 COOH-terminal amino acids suggested by the DNA sequence.Although interferon was discovered 23 years ago (1), the structure of the genes and proteins are only now being elucidated with the aid of recombinant DNA technology, DNA sequence analysis, and advances in protein purification and sequence determination. These results indicate that human leukocyte interferon consists of a family of proteins with similar primary structures.Sensitive methods for protein sequence analysis at the nanomole level (2-5) have revealed NH2-terminal amino acid sequences for lymphoblastoid (6) and leukocyte (7) interferon that differ in 2 out of 20 positions. Powerful protein purification techniques involving high-performance liquid chromatography (HPLC) have been used to resolve at least 10 different species of human leukocyte interferon, and tryptic maps of this family of proteins exhibit remarkable homology (8). Amino acid sequence analysis of tryptic and chymotryptic peptides from human lymphoblastoid interferon suggests the existence ofat least five species (9).The successful cloning of human leukocyte interferon has provided additional evidence in support of this diversity. Recombinant bacterial plasmids containing interferon cDNAs have been analyzed and reveal different restriction maps and DNA sequences (10-14). Extensive nucleic acid sequence determination of interferon cDNAs from a virus-induced myeloblast cell line indicates that at least eight distinct species of leukocyte interferon are transcribed during the induction process (14), and this result is corroborated by restriction endonuclease mapping ofinterferon sequences in a human gene bank (15)(16)(17). All of these reports suggest that every active species of human leukocyte interferon is 165 or 166 amino acids in length, even though many individual amino acid assignments differ within the family of proteins. We report here the partial amino acid sequence ofmajor species ofhuman leukocyte interferon. These proteins, which represent a significant fraction of the active interferon produced by these cells, lack the 10 COOH-terminal amino acids suggested previously (11-14) from the DNA sequences. Each of the three species is active although lacking the 10 COOH-terminal amino acids.EXPERIMENTAL PROCEDURES Human leukocyte interferon species a,, a2, and 81 were isolated and purified from chronic myelogenous leukemia (CML) cells as has been described (8,(18)(19)(20). Samples of interferon (7-12 nmol) were digested with tosylphenylalanine chloromethyl ketone-treated trypsin (TPCK-trypsin, 0.2 nmol, Worthington) for 19 hr at 370C in 50 ul of 0.2 M NaHCO3. Then, 2-mercaptoethanol (2 pb1) was added and the sample was incubated for 1 hr at 37...