Even though ureteroscopic laser lithotripsy (URSL) has become the preferred treatment option for urolithiasis due to shorter operation time and a better stone-free rate, the optimum laser pulse settings for URSL with the shortest operative times remain unknown. In this chapter, two sets of design of experiments (DOE) were conducted with response surface methodology: 1) the quantitative responses of calculus ablation and retropulsion in terms of the pulse energy, pulse width, and the number of pulses of a prototype Chromium (Cr3+), Thulium (Tm3+), Holmium (Ho3+) triple doped yttrium aluminum garnet (CTH:YAG) laser system. The ablation or retropulsion is inversely proportional to the pulse width, and the pulse width has a higher impact coefficient for the ablation than for the retropulsion. The quadratic fit of the response surface for the volume of ablation has a nonlinear relationship with the pulse width and number of pulses. 2) the laser setting optimization of laser lithotripsy of a commercially available CTH: YAG laser system. The experimental setup is based on a benchtop model first introduced by Sroka’s group. Comparing to frequency, the laser pulse energy or peak power has a higher impact coefficient to stone retropulsion as compared to stone ablation in CTH: YAG laser lithotripsy. The most efficient way to curtail stone retropulsion during laser lithotripsy is to lower the laser pulse peak power.