2020
DOI: 10.3390/microorganisms8121910
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The Taxon Hypothesis Paradigm—On the Unambiguous Detection and Communication of Taxa

Abstract: Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction, identification, and communication of taxa as datasets. Defining taxa as datasets of individuals and their traits will make taxon identification and most importantly communication of taxa precise and reproducible. This will allow datasets with standardized and atomized traits to be used digitally in identification pipelines and communicated through persistent identifiers. Such datasets are particularly useful in the context of … Show more

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Cited by 173 publications
(98 citation statements)
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“…Altogether, 25 species of fungi from 7 orders were isolated from the laboratory and the field experiments, with two-thirds (16 species) belonging to the Hypocreales (Table 1). Six of the collected fungi could not be unambiguously affiliated to a described species on the basis of their ITS DNA sequences (Table 1), and UNITE species hypotheses with respective DOI codes [22] are used for communicating on these. This might have been due to the possibility that cryptic undescribed species were involved, or that voucher specimens of known species have not yet been sequenced, or the inapplicability of the ITS region for discriminating sibling species.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…Altogether, 25 species of fungi from 7 orders were isolated from the laboratory and the field experiments, with two-thirds (16 species) belonging to the Hypocreales (Table 1). Six of the collected fungi could not be unambiguously affiliated to a described species on the basis of their ITS DNA sequences (Table 1), and UNITE species hypotheses with respective DOI codes [22] are used for communicating on these. This might have been due to the possibility that cryptic undescribed species were involved, or that voucher specimens of known species have not yet been sequenced, or the inapplicability of the ITS region for discriminating sibling species.…”
Section: Discussionmentioning
confidence: 99%
“…Species of fungi isolated from lepidopteran hosts (the field experiment data in brackets). UNITE species hypothesis (SH) codes are presented to facilitate communication on detected fungi[22].…”
mentioning
confidence: 99%
“…The last decades can be characterized by an upturn of systematics, taxonomy and biodiversity studies (e.g. Padial et al 2010 ; Kõljalg et al 2020 ; Wheeler 2020 ). That is also true in the case of the insects order Diptera (e.g.…”
Section: Introductionmentioning
confidence: 99%
“…The starting strain, in some way, is the equivalent of the outgroup that is used in statistics and dendrogram construction. This system of species delimitation at the present is not proposed to generate species delimitations autonomously and automatically, but rather to give more support to other delimitation or species hypotheses [ 51 ]. It can be used in database curation along with accurate distance analysis.…”
Section: Discussionmentioning
confidence: 99%