The dynamic association and dissociation between proteins
are the
basis of cellular signal transduction. This process becomes much more
complicated if one or both interaction partners are intrinsically
disordered because intrinsically disordered proteins can undergo disorder-to-order
transitions upon binding to their partners. p53, a transcription factor
with disordered regions, plays significant roles in many cellular
signaling pathways. It is critical to understand the binding/unbinding
mechanism involving these disordered regions of p53 at the residue
level to reveal how p53 performs its biological functions. Here, we
studied the dissociation process of the intrinsically disordered N-terminal
transactivation domain 2 (TAD2) of p53 and the transcriptional adaptor
zinc-binding 2 (Taz2) domain of transcriptional coactivator p300 using
a combination of classical molecular dynamics, steered molecular dynamics,
self-organizing maps, and time-resolved force distribution analysis
(TRFDA). We observed two different dissociation pathways with different
probabilities. One dissociation pathway starts from the TAD2 N-terminus
and propagates to the α-helix and finally the C-terminus. The
other dissociation pathway is in the opposite order. Subsequent TRFDA
results reveal that key residues in TAD2 play critical roles. Besides
the residues in agreement with previous experimental results, we also
highlighted some other residues that play important roles in the disassociation
process. In the dissociation process, non-native interactions were
formed to partially compensate for the energy loss due to the breaking
of surrounding native interactions. Moreover, our statistical analysis
results of other experimentally determined complex structures involving
either Taz2 or TAD2 suggest that the binding of the Taz2-TAD2 complex
is mainly governed by the binding site of Taz2, which includes three
main binding regions. Therefore, the complexes involving Taz2 may
follow similar binding/unbinding behaviors, which could be studied
together to generate common principles.