In the past decades, the expansion and modernisation of agriculture in the mountainous areas of Southeast Asia has had severe impacts on biodiversity, as the once species-rich forests were turned into homogeneous fields receiving ample external inputs. A common feature of permanent cropping with annual crops is the frequent change of crop choice, depending on market opportunities or other motives. However, the precise effect of crop shifts on weeds in tropical areas is largely unknown. In this study, we investigated the short-term effect of crop sequences on the diversity of weed communities in smallholder fields in Northern Thailand. Crop choices were upland rice, maize, fallow and young tree plantations with or without intercrop. We counted the number of crop shifts and the number of crops involved during a 3-years period preceding weed sampling. We showed that the number of crop shifts did not affect weed density and biomass. However, herbaceous species number and diversity (measured as Shannon index) increased by 36% and 46% respectively, while herbaceous species dominance decreased by 38%, in fields with yearly crop shifts compared to fields with no shifts in the previous three years. The effect of a particular crop on diversity, or the effect of . CC-BY-NC-ND 4.0 International license available under a was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is madeThe copyright holder for this preprint (which this version posted May 11, 2020. ;