The helix-loop-helix E2A proteins (E12 and E47) govern cellular growth and differentiation. To identify binding partners that regulate the function of these ubiquitous transcription factors, we screened for proteins that interacted with the C terminus of E12 by the yeast interaction trap. UbcE2A, a rat enzyme that is highly homologous to and functionally complements the yeast ubiquitin-conjugating enzyme UBC9, was identified and cloned. UbcE2A appears to be an E2A-selective ubiquitin-conjugating enzyme because it interacts specifically with a 54-amino acid region in E47-(477-530) distinct from the helix-loop-helix domain. In contrast, most of the UbcE2A protein is required for interaction with an E2A protein. The E2A proteins appear to be degraded by the ubiquitin-proteasome pathway because the E12 half-life of 60 min is extended by the proteasome inhibitor MG132, and E12 is multi-ubiquitinated in vivo. Finally, antisense UbcE2A reduces E12 degradation. By participating in the degradation of the E2A proteins, UbcE2A may regulate cell growth and differentiation.By alternative splicing, the E2A gene encodes two proteins, E12 and E47, through two adjacent exons encoding a basic helix-loop-helix (HLH) 1 motif (1). These proteins belong to a family of eukaryotic transcription regulators distinguished by the highly conserved HLH motif, which mediates dimerization, and by the adjacent basic region, which mediates site-specific DNA binding (2, 3). The ubiquitous E2A proteins form heterodimers with tissue-specific HLH proteins that then bind to DNA and up-regulate the transcription of target genes. Tissuespecific HLH proteins include the MyoD family involved in skeletal muscle differentiation (4), the achaete-scute family involved in neuronal differentiation (5), and SCL/TAL, which is involved in hematopoiesis (6). The E2A proteins also form homodimers that are linked by intermolecular disulfide bonds in B cells but not muscle cells (7). These homodimers are thought to be the predominant DNA-binding species in B cells (8). In mice carrying a null mutation in E2A, immunoglobulin gene segments do not rearrange and the animals lack mature B lymphocytes (9, 10).In addition to its role in cellular differentiation, the E2A gene is the breakpoint of two translocations associated with childhood lymphoid leukemia. A truncated E2A gene fuses to the PBX1 homeobox gene (11) and to the HLF basic leucine zipper gene (12). Because the E2A portion is required for transformation in both instances, E2A proteins appear to play a role in growth control. Peverali et al. (13) have shown that overexpression of E12 or E47 inhibits cell proliferation and mediates arrest of growth a few hours before the G 1 -S transition of the cell cycle. The level of E2A proteins at different stages of the cell cycle could also determine whether cells proliferate or differentiate.Certain transcription factors and cell cycle regulators are degraded rapidly in vivo (14). For example, c-Fos and c-Jun, which have half-lives of about 30 and 90 min, respectively, ca...