Organisms of the candidate phylum termite group 1 (TG1) are regularly encountered in termite hindguts but are present also in many other habitats. Here, we report the complete genome sequence (1.64 Mbp) of "Elusimicrobium minutum" strain Pei191 T , the first cultured representative of the TG1 phylum. We reconstructed the metabolism of this strictly anaerobic bacterium isolated from a beetle larva gut, and we discuss the findings in light of physiological data. E. minutum has all genes required for uptake and fermentation of sugars via the Embden-Meyerhof pathway, including several hydrogenases, and an unusual peptide degradation pathway comprising transamination reactions and leading to the formation of alanine, which is excreted in substantial amounts. The presence of genes encoding lipopolysaccharide biosynthesis and the presence of a pathway for peptidoglycan formation are consistent with ultrastructural evidence of a gram-negative cell envelope. Even though electron micrographs showed no cell appendages, the genome encodes many genes putatively involved in pilus assembly. We assigned some to a type II secretion system, but the function of 60 pilE-like genes remains unknown. Numerous genes with hypothetical functions, e.g., polyketide synthesis, nonribosomal peptide synthesis, antibiotic transport, and oxygen stress protection, indicate the presence of hitherto undiscovered physiological traits. Comparative analysis of 22 concatenated single-copy marker genes corroborated the status of "Elusimicrobia" (formerly TG1) as a separate phylum in the bacterial domain, which was so far based only on 16S rRNA sequence analysis.At least half of the phylum-level lineages within the domain Bacteria do not comprise pure cultures but are, rather, represented only by 16S rRNA gene sequences of environmental origin (43). The number of such candidate phyla is still growing, and the biology of the members of these phyla is usually completely obscure. The first sequences of the candidate phylum termite group 1 (TG1) (23) were obtained from the hindgut of the termite Reticulitermes speratus, where they represent a substantial portion of the gut microbiota (21, 41). Meanwhile, numerous sequences affiliated with this phylum have also been retrieved from habitats other than termite guts. They form several deep-branching lineages comprising sequences derived not only from intestinal tracts but also from soils, sediments, and contaminated aquifers (14,20).Recently, we were able to isolate strain Pei191 T , the first pure-culture representative of the TG1 phylum, from the gut of a humivorous scarab beetle larva, Pachnoda ephippiata (14). Based on the 16S rRNA gene sequence, strain Pei191T is a member of the "intestinal cluster," which consists of sequences derived from invertebrate guts and cow rumen (20) and is only distantly related to the so-called "endomicrobia," a lineage of TG1 bacteria comprising endosymbionts of termite gut protozoa (24,42,54). It is an obligately anaerobic ultramicrobacterium that grows heterotrophically on g...