Background: There is a general paucity of cysteine residues within the passenger domains of autotransporter proteins. Results: Distantly spaced cysteines forming disulfide-bonded loops or those enclosing structural elements are secretion-incompetent. Conclusion: Only closely spaced cysteine pairs are compatible with the autotransporter pathway. Significance: Secretion of folded peptides by the autotransporter pathway is limited; hence autotransporters lack large disulfide-bonded loops to remain secretion-competent.Autotransporters are a superfamily of virulence factors typified by a channel-forming C terminus that facilitates translocation of the functional N-terminal passenger domain across the outer membrane of Gram-negative bacteria. This final step in the secretion of autotransporters requires a translocation-competent conformation for the passenger domain that differs markedly from the structure of the fully folded secreted protein.The nature of the translocation-competent conformation remains controversial, in particular whether the passenger domain can adopt secondary structural motifs, such as disulfide-bonded segments, while maintaining a secretion-competent state. Here, we used the endogenous and closely spaced cysteine residues of the plasmid-encoded toxin (Pet) from enteroaggregative Escherichia coli to investigate the effect of disulfide bond-induced folding on translocation of an autotransporter passenger domain. We reveal that rigid structural elements within disulfide-bonded segments are resistant to autotransporter-mediated secretion. We define the size limit of disulfide-bonded segments tolerated by the autotransporter system demonstrating that, when present, cysteine pairs are intrinsically closely spaced to prevent congestion of the translocator pore by large disulfide-bonded regions. These latter data strongly support the hairpin mode of autotransporter biogenesis.Gram-negative bacteria possess seven secretion pathways (numbered I-VI and the chaperone-usher pathway) that facilitate navigation of secreted proteins through the inner membrane, periplasm, and outer membrane (OM).2 These pathways generally use specialized machineries that span the width of the cell envelope and that differ in complexity, structural features, and mechanism of protein translocation. At first glance, the simplicity of the type Va secretion pathway appeared to be the exception; all the functional elements required for secretion appeared to be contained within a single protein with the N-terminal signal peptide mediating inner membrane translocation, the central passenger domain being the secreted functional moiety, and the C terminus forming a -barrel structure in the OM, the latter element being essential for passenger domain translocation to the bacterial cell surface. Accordingly, the superfamily of proteins that exploit this pathway for their delivery to the surface of Gram-negative bacteria was termed autotransporters (ATs) (1). However, recent studies demonstrating that passenger domain secretion requires the ...