The genetic architecture of age-related macular degeneration (AMD) involves numerous genetic variants, both common and rare, in the coding region of complement factor H (CFH). While these variants explain high disease burden in some families, they fail to explain the pathology in all. We selected families whose AMD was unexplained by known variants and performed whole exome sequencing to probe for other rare, highly penetrant variants. We identified four rare loss-of-function variants in CFH associated with AMD. Missense variant CFH 1:196646753 (C192F) segregated perfectly within a family characterized by advanced AMD and drusen temporal to the macula. Two families, each comprising a pair of affected siblings with extensive extramacular drusen, carried essential splice site variant CFH 1:196648924 (IVS6+1G>A) or missense variant rs139360826 (R175P). In a fourth family, missense variant rs121913058 (R127H) was associated with AMD. Most carriers had early onset bilateral advanced AMD and extramacular drusen. Carriers tended to have low serum Factor H levels, especially carriers of the splice variant. One missense variant (R127H) has been previously shown not to be secreted. The two other missense variants were produced recombinantly: compared to wild type, one (R175P) had no functional activity and the other (C192F) had decreased secretion.Age-related macular degeneration (AMD), an irreversible degenerative disease, is the leading cause of blindness in adults over the age of 60. The disease affects the central region of the retina, resulting in progressive visual impairment and reduced quality of life. AMD is highly heritable and twin studies have shown that between 46% and 71% of phenotypic variance is explained by genetic factors 1,2 . Several environmental and genetic components contribute to its multifactorial etiology 2 . Early genome-wide scans for evidence of linkage in AMD families revealed several signals including one mapping to the long (q) arm of chromosome 1 [3][4][5] . Investigation of the genetic architecture of AMD subsequently evolved over the next 15 years on population, family, and individual levels. Genome-wide association studies (GWAS) and meta-GWAS efforts identified numerous genetic variants in over 20 different genes showing an association with AMD risk, including a common variant in the coding region of complement factor H (CFH) (RefSeq