Abstract. Gadolinium complexes are attracting increasing attention
as spin labels for EPR dipolar distance measurements in biomolecules and
particularly for in-cell measurements. It has been shown that flip-flop
transitions within the central transition of the high-spin Gd3+ ion
can introduce artefacts in dipolar distance measurements, particularly when
measuring distances less than 3 nm. Previous work has shown some reduction
of these artefacts through increasing the frequency separation between the
two frequencies required for the double electron–electron resonance (DEER)
experiment. Here we use a high-power (1 kW), wideband, non-resonant system
operating at 94 GHz to evaluate DEER measurement protocols using two stiff
Gd(III) rulers, consisting of two bis-Gd3+–PyMTA complexes, with
separations of 2.1 nm and 6.0 nm, respectively. We show that by avoiding
the -12→12 central transition completely, and placing
both the pump and the observer pulses on either side of the central
transition, we can now observe apparently artefact-free spectra and narrow
distance distributions, even for a Gd–Gd distance of 2.1 nm. Importantly we
still maintain excellent signal-to-noise ratio and relatively high
modulation depths. These results have implications for in-cell EPR
measurements at naturally occurring biomolecule concentrations.