33Nematode-trapping fungi (NTF) are a group of specialized microbial predators that consume 34 nematodes when food sources are limited. Predation is initiated when conserved nematode 35 ascaroside pheromones are sensed, followed by the development of complex trapping devices. 36To gain insights into the co-evolution of this inter-kingdom predator-prey relationship, we 37 investigated natural populations of nematodes and NTF, that we found to be ubiquitous in soils. 38Arthrobotrys species were sympatric with various nematode species and behaved as generalist 39 predators. The ability to sense prey amongst wild isolates of A. oligospora varied greatly, as 40 determined by the number of traps after exposure to Caenorhabditis elegans. While some strains 41 were highly sensitive to C. elegans and the nematode pheromone ascarosides, others responded 42 only weakly. Furthermore, strains that were highly sensitive to the nematode prey also developed 43 traps faster. The polymorphic nature of trap formation correlated with competency in prey 44 killing, as well as with the phylogeny of A. oligospora natural strains, calculated after assembly 45 and annotation of the genomes of twenty isolates. A chromosome level genome assembly and 46 annotation was established for one of the most sensitive wild isolate, and deletion of the only G 47 protein b subunit-encoding gene of A. oligospora nearly abolished trap formation, implicating G 48 protein signaling in predation. In summary, our study establishes a highly responsive A. 49 oligospora wild isolate as a novel model strain for the study of fungal-nematode interactions and 50 demonstrates that trap formation is a fitness character in generalist predators of the NTF family. 51 52
Significance statement 53Nematode-trapping fungi (NTF) are carnivorous microbes that hold potential to be used 54 as biological control agents due to their ability to consume nematodes. In this work we show that 55 NTF are ubiquitous generalist predators found in sympatry with their prey in soil samples. Wild 56 isolates of NTF displayed a naturally diverse ability to execute their predatory lifestyle. We 57 generated a large whole genome sequencing dataset for many of the fungal isolates that will 58 serve as the basis of future projects isolates. In particular, we establish TWF154, a highly 59 responsive strain of Arthrobotrys oligospora, as a model strain to study the genetics of NTF. 60Lastly, we provide evidence that G-protein signaling is necessary for trap induction in NTF. 61 62 63 64The living component of soils are in permanent interaction and play central roles in 65 various aspects of biogeochemistry, including nutrient cycling and transport across distances (1). 66Specifically, nematodes are the most abundant animals in nature, amounting to a staggering 0.3 67 gigatonnes or 4.5 x 10 20 individuals, many of which are devastating parasites of plants, animals 68 and humans (2). Although available, nematicide chemicals pose severe environmental and health 69 risks and therefore, biological cont...