We used recombinant techniques to create a two-chain form (residues 1-345 and residues 346-758) of the vitamin K-dependent γ-glutamyl carboxylase, a glycoprotein located in the endoplasmic reticulum containing five transmembrane domains. The two-chain carboxylase had carboxylase and epoxidase activities similar to those of one-chain carboxylase. In addition, it had normal affinity for the propeptide of factor IX. We employed this molecule to investigate formation of the one disulfide bond in carboxylase, the transmembrane structure of carboxylase, and the potential interactions among the carboxylase's transmembrane domains. Our results indicate that the two peptides of the two-chain carboxylase are joined by a disulfide bond. Proline 378 is important for the structure necessary for disulfide formation. Results with the P378L carboxylase indicate that noncovalent bonds maintain the two-chain structure even when the disulfide bond is disrupted. As we had previously proposed, the fifth transmembrane domain of carboxylase is the last and only transmembrane domain in the C-terminal peptide of the two-chain carboxylase. We show that the noncovalent association between the two chains of carboxylase involves an interaction between the fifth transmembrane domain and the second transmembrane domain. Results of a homology model of transmembrane domains 2 and 5 suggest that not only do these two domains associate but that transmembrane domain 2 may interact with another transmembrane domain. This latter interaction may be mediated at least in part by a motif of glycine residues in the second transmembrane domain.The vitamin K-dependent γ-glutamyl carboxylase is a 758-residue integral membrane glycoprotein of the endoplasmic reticulum (ER). 1 It catalyzes the posttranslational modification of specific glutamic acid residues of vitamin K-dependent proteins to γ-carboxyglutamic acid residues. This posttranslational modification is critical for the biological † This work was supported by National Institutes of Health (NIH) Grant HL48318 (to D.W.S.) and by the Intramural Research Program of the NIH and NIEHS (to L.P.).*Author to whom correspondence should be addressed. Phone: 919-962-2267. Fax: 919-962-9266. jktie@email.unc.edu. ‡ University of North Carolina at Chapel Hill. § National Institute of Environmental Health Sciences, NIH.1 Abbreviations: ER, endoplasmic reticulum; TMD, transmembrane domain; NEM, CHAPS,dimethylammonio]-1-propanesulfonate; DTT, dithiothreitol; MOPS, 3-(N-morpholino)propanesulfonic acid (4-morpholinepropanesulfonic acid); MES, 2-(N-morpholino)ethanesulfonic acid (4-morpholineethanesulfonic acid); vitamin K 1(20) , 2-methyl-3-phytyl-1,4-naphthoquinone; PNGase F, peptide:N-glycosidase F; proFIX, 19 amino acid peptide comprising residues TVFLDHENANKILNRPKRY of human profactor IX; SRII, sensory rhodopsin II; SDS-PAGE, sodium dodecyl sulfate-polyacrylamide gel electrophoresis; PVDF, polyvinylidene fluoride.