The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server

Hoogland, Christine; Mostaguir, Khaled; Appel, Ron D.; Lisacek, Frédérique

doi:10.1016/j.jprot.2008.02.005

Cited by 52 publications

(35 citation statements)

References 12 publications

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“…Another resource is represented by the World-2DPAGE Constellation project [23] that includes many 2D-PAGE resources as experimental 2D-PAGE results and software tools for assisting researchers working in this area.…”

Section: Proteomics Databasesmentioning

confidence: 99%

Bioinformatic resources for the investigation of proteins and proteomes

Facchiano¹

2017

Peptidomics

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Experimental techniques in omics sciences need strong support of bioinformatics tools for the data management, analysis and interpretation. Scientific community develops continuously new databases and tools. They make it possible the comparison of new experimental data with the existing ones, to gain new knowledge. Bioinformatics assists proteomics scientists for protein identification from experimental data, management of the huge data produced, investigation of molecular mechanisms of protein functions, their roles in biochemical pathways, and functional interpretation of biological processes. This article introduces the main bioinformatics resources for investigation in the protein world, with references to analyses performed by means of free tools available on the net.

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Section: Proteomics Databasesmentioning

confidence: 99%

Bioinformatic resources for the investigation of proteins and proteomes

Facchiano¹

2017

Peptidomics

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“…The World-2DPage Constellation plays a key role in the dissemination of gel-based proteomics results through the World-2DPage portal, which connects a federation of Make2D-DB implementing databases. 52 Furthermore, the World-2DPage repository enables data propagation to a central server and thereby allows researchers to avoid the overhead of setting up a local database. Gel images in the system are annotated by the protein identifications and brief identification information, and the Web site allows the user to search for proteins across many experiments.…”

Section: Managing Proteomics Datamentioning

confidence: 99%

Enabling Computational Proteomics by Public and Local Data Management Systems

Helsens

Martens

2012

Circ Cardiovasc Genet

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“…The World-2DPAGE Constellation [18] is an effort of the Swiss Institute of Bioinformatics to promote and publish two-dimensional gel electrophoresis proteomics data online through the ExPASy proteomics server. The World-2DPAGE Constellation consists of three components:…”

Section: D Gel Databases: World-2dpagementioning

confidence: 99%

Protein Bioinformatics Databases and Resources

Chen¹,

Huang²,

Wu³

2010

Methods in Molecular Biology

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Many publicly available data repositories and resources have been developed to support protein related information management, data-driven hypothesis generation and biological knowledge discovery. To help researchers quickly find the appropriate protein related informatics resources, we present a comprehensive review (with categorization and description) of major protein bioinformatics databases in this chapter. We also discuss the challenges and opportunities for developing next-generation protein bioinformatics databases and resources to support data integration and data analytics in the Big Data era.

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The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server

Cited by 52 publications

References 12 publications

Bioinformatic resources for the investigation of proteins and proteomes

Bioinformatic resources for the investigation of proteins and proteomes

Enabling Computational Proteomics by Public and Local Data Management Systems

Protein Bioinformatics Databases and Resources

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