Review on ASCIZ/ATMIN, with data on DNA/RNA, on the protein encoded and where the gene is implicated. Keywords Apoptosis, dynein, DNA damage, transcription factor, lung
IdentityOther names: ASCIZ, ZNF822 HGNC (Hugo): ATMIN Location: 16q23.2 Local order: Gene orientation: centromere -5' ASCIZ/ATMIN 3'-telomere. ASCIZ/ATMIN is flanked towards the centromere by CENPN (in the same transcriptional orientiation) and towards the telomere by C16orf46 in opposite transcriptional orientation (NCBI Gene view, gene ID 23300, version 3-Jun-2014). Note: The gene was originally reported to encode an ATM-substrate Chk2-interacting Zinc-finger protein and referred to by the name ASCIZ in NCBI/Genbank, before the official gene name was changed to ATMIN by HGNC.
DNA/RNA
DescriptionThe human ASCIZ/ATMIN gene contains five exons over 11497 bases. The main transcript results from splicing of exon A, parts of exon C, and exons D and E and gives rise to the "full-length" protein containing 823 amino acids with four Zinc-fingers. Two alternative transcripts -comprising either exon B, part of exon C and exons D and E, or a longer exon C and exons D and E -give rise to a shorter 667-residue protein with only two Zinc-fingers. The mouse ASCIZ gene structure may be simpler with only four exons and single main mRNA encoding an 818-residue protein similar to the human 4-Zinc-finger product.
TranscriptionIn Northern and Western blot experiments, the two main isoforms of ASCIZ/ATMIN are expressed at relatively similar levels in a wide range of human tissues and all cancer-derived cell lines tested (McNees et al., 2005). Northern blots of various mouse tissues also indicate relatively similar expression levels in a wide range of organs (Jurado et al., 2010).