This paper does some research and discussion on the finite element analysis of a building structure, especially the computer graphics simulation method in building structure simulation. Moreover, with the support of BIM technology and computer finite element simulation technology, this paper constructs a building structure simulation system and analyzes the building structure simulation system based on actual conditions such as building structure and stress load. In addition, this paper improves the traditional structural analysis algorithm and designs experiments to evaluate the effect of the method proposed in this paper and analyze the data in the form of simulation to compare the validity of the test results. Finally, an experiment is designed to evaluate the data processing capability of the test system in this paper. The experimental analysis results verify the effectiveness of the method in this paper, which can provide relevant theoretical references for subsequent building structure simulation.