As one of the most promising nonprecious metal catalysts for the oxygen reduction reaction (ORR), the structure of the active site on nitrogen-doped carbon materials is still under debate. Here, we report that the sensitivity of the ORR on the local configuration of multiple nitrogen dopants may be overlooked. Combining global structure searching with density functional theory calculations, we established the structure−activity relationship for 19 and 298 possible configurations of graphitic nitrogen-doped graphene with N content of 2 and 3%, respectively. It was revealed that the stability cannot be a screener to determine the major contributor to the activity. 77.5% of current density is contributed by the active configuration with 4.59% population on the graphene containing 3% nitrogen. It unambiguously demonstrates the configuration sensitivity of N-doped graphene for ORR and opens a new window to identifying the optimal structure of N-doped carbons for various applications.C atalysis is a structure-sensitive phenomenon heavily depending on the local coordination of applied catalyst, which has been validated for heterogeneous catalysis over metals 1,2 and metal oxides, 3,4 single-atom catalysts, 5,6 and enzymic catalysts. 7,8 For instance, the reactivity for a certain reaction over a well-defined metal crystal has been demonstrated to be very different at terrace, steps, kinks, corners, edges, or adatoms for various reactions, which has triggered tremendous efforts to explore the size and shape effects of nanoparticle catalysts. 9−11 Metal-free carbons with heteroatom dopants have been discovered as an effective catalyst for electrocatalytic oxygen reduction reaction (ORR), 12−14 CO 2 reduction, 15−17 and diverse chemical synthesis 18,19 during the recent decades. Experimental and theoretical studies suggest that the incorporation of heteroatoms redistributes electrons between dopants and surrounding carbon atoms and changes the spin density, thereby endowing carbon with catalytic reactivity. 20−22 Since the nonmetallic dopants are usually in the form of isolated atoms rather than in the forms of crystals or clusters, it is natural that the active sites on doped carbons are highly sensitive to the local coordination, namely, being structuresensitive. Taking the most investigated nitrogen-doped carboncatalysts as an example, it has been widely accepted that different nitrogen moieties, that is, graphitic/quaternary, pyridinic, and pyrrolic nitrogen, have very different reactivities in ORR. Numerous efforts have been devoted to discriminate those nitrogen species as candidates of active sites. Nevertheless, it is still heavily controversial to identify graphitic 23−26 or pyridinic 27−29 nitrogen as the active site.