2015
DOI: 10.1007/s00894-015-2577-5
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Theoretical predictions of thermodynamic parameters of adsorption of nitrogen containing environmental contaminants on kaolinite

Abstract: In this study thermodynamic parameters of adsorption of nitrogen containing environmental contaminants (NCCs, 2,4,6, trinitrotoluene (TNT), 2,4-dinitrotoluene (DNT), 2,4-dinitroanisole (DNAN), and 3-one-1,2,4-triazol-5-one (NTO)) interacting with the tetrahedral and octahedral surfaces of kaolinite were predicted. Adsorption complexes were investigated using a density functional theory and both periodic and cluster approach. The complexes, modeled using the periodic boundary conditions approach, were fully opt… Show more

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Cited by 9 publications
(5 citation statements)
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“…The reference structures of proteins were subjected to Protein Preparation Wizard (Prep Wiz) [2527] panel implemented in Maestro v10.2 (Schrödinger, LLC, New York, 2015) for optimization in several steps. Preliminarily, the preparation was preprocessed to assign bond orders to all bonds, add hygrogens to all atoms, creat disulfide bonds within 3.2 Å, cap termini to fill up ACE (N-acetyl) and NMA (N-methyl amide) and delete all unrelated waters [28].…”
Section: Methodsmentioning
confidence: 99%
“…The reference structures of proteins were subjected to Protein Preparation Wizard (Prep Wiz) [2527] panel implemented in Maestro v10.2 (Schrödinger, LLC, New York, 2015) for optimization in several steps. Preliminarily, the preparation was preprocessed to assign bond orders to all bonds, add hygrogens to all atoms, creat disulfide bonds within 3.2 Å, cap termini to fill up ACE (N-acetyl) and NMA (N-methyl amide) and delete all unrelated waters [28].…”
Section: Methodsmentioning
confidence: 99%
“…Other algorithms, such as FASTER [178,180], uses stochastic criteria to continue with the optimization in the case of DEE failure. However, this means that in the case of DEE non-convergence the GMEC guarantee is lost, although approaching the near-GMEC limit may still be possible [133,181]. …”
Section: Challenges In Automated Protein Designmentioning
confidence: 99%
“…Anatase (TiO 2 ) is a semiconductor mineral, present in suspended soil particles, with high photocatalytic activity [17,18]. On the other hand, kaolinite was selected as a proxy for the soil clay minerals [7,[19][20][21][22].…”
Section: Introductionmentioning
confidence: 99%