The braking torque mathematical modelling in electromagnetic eddy current brake (ECB) often ignores the skin effect that occurrs during operation. However this phenomenon can not be simply neglected. Therefore, this paper presents a mathematical model of braking torque for a unipolar axial type of ECB system with a non-magnetic disk, which considers the skin effects. The use of mathematical models that consider the existence of skin effects is significant in approaching the braking torque according to the actual condition. The utilization of generic calculations to the model of the ECB braking torque leads to invalid results. Hence, in this paper, the correction factor was added to improve the braking torque calculation as a comparator to the proposed equation. However, the modification and addition of the correction factor were only valid to estimate the low-speed regimes of torque, but very distant for the high-speed condition. From the comparison of calculated values using analytical and 3D modelling, the amount of braking torque at a low speed was found to have an average error for the equation using a correction factor of 1.78 Nm, while after repairing, a value of 1.16 Nm was obtained. For the overall speed, an average error of 14.63 Nm was achieved, while the proposed equation had a small difference of 1.79 Nm. The torque difference from the calculation results of the proposed model with the measurement value in the experiment was 4.9%. Therefore, it can be concluded that the proposed equation provided a better braking torque value approach for both low and high speeds.