Two methyl esters were examined as models for the pyrolysis of biofuels. Dilute samples (0.06-0.13%) of methyl acetate (CHCOOCH) and methyl butanoate (CHCHCHCOOCH) were entrained in (He, Ar) carrier gas and decomposed in a set of flash-pyrolysis microreactors. The pyrolysis products resulting from the methyl esters were detected and identified by vacuum ultraviolet photoionization mass spectrometry. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures in the pulsed microreactor were about 20 Torr and residence times through the reactors were roughly 25-150 μs. Reactor temperatures of 300-1600 K were explored. Decomposition of CHCOOCH commences at 1000 K, and the initial products are (CH═C═O and CHOH). As the microreactor is heated to 1300 K, a mixture of CH═C═O and CHOH, CH, CH═O, H, CO, and CO appears. The thermal cracking of CHCHCHCOOCH begins at 800 K with the formation of CHCHCH═C═O and CHOH. By 1300 K, the pyrolysis of methyl butanoate yields a complex mixture of CHCHCH═C═O, CHOH, CH, CH═O, CO, CO, CHCH═CH, CHCHCH, CH═C═CH, HCCCH, CH═C═C═O, CH═CH, HC≡CH, and CH═C═O. On the basis of the results from the thermal cracking of methyl acetate and methyl butanoate, we predict several important decomposition channels for the pyrolysis of fatty acid methyl esters, R-CH-COOCH. The lowest-energy fragmentation will be a 4-center elimination of methanol to form the ketene RCH═C═O. At higher temperatures, concerted fragmentation to radicals will ensue to produce a mixture of species: (RCH + CO + CH) and (RCH + CO + CH═O + H). Thermal cracking of the β C-C bond of the methyl ester will generate the radicals (R and H) as well as CH═C═O + CH═O. The thermochemistry of methyl acetate and its fragmentation products were obtained via the Active Thermochemical Tables (ATcT) approach, resulting in ΔH(CHCOOCH) = -98.7 ± 0.2 kcal mol, ΔH(CHCO) = -45.7 ± 0.3 kcal mol, and ΔH(COOCH) = -38.3 ± 0.4 kcal mol.