In previous work, we investigated thermodynamic processes in systems at the mesoscopic level where traditional thermodynamic descriptions (macroscopic or microscopic) may not be fully adequate. The key result is that entropy in such systems does not change continuously, as in macroscopic systems, but rather in discrete steps characterized by the quantization constant β. This quantization reflects the underlying discrete nature of the collision process in low-dimensional systems and the essential role played by thermodynamic fluctuations at this scale. Thermodynamic variables conjugate to the forces, along with Glansdorff–Prigogine’s dissipative variable can be discretized, enabling a mesoscopic-scale formulation of canonical commutation rules (CCRs). In this framework, measurements correspond to determining the eigenvalues of operators associated with key thermodynamic quantities. This work investigates the quantization parameter β in the CCRs using a nano-gas model analyzed through classical statistical physics. Our findings suggest that β is not an unknown fundamental constant. Instead, it emerges as the minimum achievable value derived from optimizing the uncertainty relation within the framework of our model. The expression for β is determined in terms of the ratio χ, which provides a dimensionless number that reflects the relative scales of volume and mass between entities at the Bohr (atomic level) and the molecular scales. This latter parameter quantifies the relative influence of quantum effects versus classical dynamics in a given scattering process.