2012
DOI: 10.1063/1.4769297
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Thermodynamic state-dependent structure-based coarse-graining of confined water

Abstract: We develop thermodynamic state-dependent single-site isotropic coarse-grained potentials to predict the structure of water confined inside graphene slit-like channels by two multiscale simulation approaches: the coarse-grained molecular dynamics (CG-MD) and the empirical potential-based quasi-continuum theory (EQT). The structurally-consistent coarse-grained potentials for the CG-MD and EQT are systematically determined from the reference all-atom SPC/E water MD (AA-MD) results. For optimization of the CG-MD p… Show more

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Cited by 25 publications
(24 citation statements)
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“…Variations in the ion/solvent densities can be quantified using MD simulations with appropriate spatial binning. Alternatively, one can utilize continuum based theories such as the recently proposed empirical potential based quasi-continuum theory (EQT), [31][32][33][34][35][36][37][38] which a multiscale formulation to compute the density and the corresponding PMF profiles in the nanochannel. The advantages of using EQT over particle-based methods are significant in terms of computing speed since it is orders of magnitude faster.…”
Section: Ion Concentration and Solvent Viscosity Variationmentioning
confidence: 99%
“…Variations in the ion/solvent densities can be quantified using MD simulations with appropriate spatial binning. Alternatively, one can utilize continuum based theories such as the recently proposed empirical potential based quasi-continuum theory (EQT), [31][32][33][34][35][36][37][38] which a multiscale formulation to compute the density and the corresponding PMF profiles in the nanochannel. The advantages of using EQT over particle-based methods are significant in terms of computing speed since it is orders of magnitude faster.…”
Section: Ion Concentration and Solvent Viscosity Variationmentioning
confidence: 99%
“…More details on the optimization procedure and PMF matching technique can be found in Ref. 30. and hydrogen density profiles are normalized by the density of the bulk mixture which is 17.73 nm 3 .…”
Section: Simulation Detailsmentioning
confidence: 99%
“…26,27 Later, it was extended to more complex molecules such as carbon dioxide and water with electrostatic interactions. [28][29][30] In these studies, the effect of anisotropic electrostatic forces is taken into account by using the coarse-grained (CG) potentials from the detailed all-atom level. EQT is a robust and fast approach for providing accurate density and PMF profiles for confined fluids.…”
Section: Introductionmentioning
confidence: 99%
“…22,23 We note that, in Eq. (6), to determine the fluid-fluid potential energy, U ff (r), a mean field approximation (MFA) is invoked, i.e., the fluid-fluid pair correlations are neglected.…”
Section: A Eqtmentioning
confidence: 99%
“…, c n+1 }, using a systematic approach based on the potential of mean force (PMF) matching, which we developed in Ref. 23. PMF-matching approach optimizes structurally consistent potential parameters.…”
Section: Simulation Detailsmentioning
confidence: 99%