Background::
Peroxisome proliferator-activated receptor-gamma (PPAR-γ) plays a crucial
role in regulating lipid and glucose metabolism, cancer, and inflammation, making it an attractive
target for drug development. Meanwhile, β-Carotene, known for its antioxidant, anticancer and antiinflammatory
properties, holds promise for modulating PPAR-γ activity. Understanding their interaction
is crucial.
Objective::
This study aims to explore the therapeutic potential of β-carotene in modulating PPAR-γ
activity by investigating their binding interactions.
objective:
To explore the potential therapeutic applications of β-carotene in modulating PPAR-γ activity, it is of great interest to comprehend the binding interactions between PPAR-γ and β-carotene.
Methods::
Screening of bioactive compounds from PubChem was conducted using GlideXP to identify
potential PPAR-γ (PDB: 2PRG) ligands. During this screening, both protein and bioactive compounds
were prepared following established protocols. Subsequently, the compounds were docked
into the ligand binding domain (LBD) of the protein using XP docking. Rosiglitazone was used as an
internal control. β-Carotene emerged as a lead based on Lipinski’s rule, docking score, free energy,
and LBD interactions. Molinspiration analysis assessed its drug likeness. Molecular dynamics (MD)
simulations utilizing Desmond with OPLS 2005 force field were employed to examine the dynamics
and stability of the PPAR-γ/β-carotene complex.
Results::
β-carotene had strong hydrophobic interactions with specific residues within the ligandbinding
domain of PPAR-γ. The calculated binding affinity (-9.07 kcal/mol) indicated a strong interaction
between β-carotene and PPAR-γ, suggesting that β-carotene may modulate the activity of
PPAR-γ. On a time scale of 100 ns, the MD simulations provided insights into the conformational
changes, flexibility, and intermolecular interactions within the complex.
Conclusion::
In silico docking and dynamics simulation analyses show that PPAR-γ and β-carotene
can form a stable complex, suggesting potential implications for metabolic modulation.