The thiol-based redox regulation system is believed to adjust chloroplast functions in response to changes in light environments. A redox cascade via the ferredoxin-thioredoxin reductase (FTR)/thioredoxin (Trx) pathway has been traditionally considered to serve as a transmitter of light signals to target enzymes. However, emerging data indicate that chloroplasts have a complex redox network composed of diverse redox-mediator proteins and target enzymes. Despite extensive research addressing this system, two fundamental questions are still unresolved: How are redox pathways orchestrated within chloroplasts, and why are chloroplasts endowed with a complicated redox network? In this report, we show that NADPH-Trx reductase C (NTRC) is a key redox-mediator protein responsible for regulatory functions distinct from those of the classically known FTR/Trx system. Target screening and subsequent biochemical assays indicated that NTRC and the Trx family differentially recognize their target proteins. In addition, we found that NTRC is an electron donor to Trx-z, which is a key regulator of gene expression in chloroplasts. We further demonstrate that cooperative control of chloroplast functions via the FTR/Trx and NTRC pathways is essential for plant viability. Arabidopsis double mutants impaired in FTR and NTRC expression displayed lethal phenotypes under autotrophic growth conditions. This severe growth phenotype was related to a drastic loss of photosynthetic performance. These combined results provide an expanded map of the chloroplast redox network and its biological functions.T o preserve the integrity and efficiency of photosynthesis and other metabolic reactions, chloroplast enzymes need to be flexibly and appropriately controlled in response to changes in light environments. The photosynthetic electron transport chain in the chloroplast thylakoid membrane converts light energy into chemical energy, which is captured and stored in ATP and NADPH. These molecules are primarily consumed by the Calvin-Benson cycle in the stroma, but part of the reducing power is used for other metabolic reactions in chloroplasts (e.g., nitrogen and sulfur metabolism). One pathway for the reducing power is the redox cascade, mediated by ferredoxin-thioredoxin reductase (FTR) and thioredoxin (Trx). In this system, FTR receives reducing power from the light-driven photosynthetic electron transport chain via ferredoxin and then donates the reducing power to Trx. A reduced form of Trx subsequently transfers reducing power to target proteins through a dithiol-disulfide exchange reaction, allowing the targets to modulate the enzymatic activities. The redox cascade via the FTR/Trx pathway provides the basis for thiol-based redox regulation in chloroplasts and ensures light-responsive control of chloroplast functions (1, 2).The FTR/Trx pathway has been considered the only pathway regulating redox reactions in chloroplasts. Information about its target proteins has also been limited to a specific set of lightactivated enzymes, such as some enzy...