Outer arm dynein (OAD) of cilia and flagella contains two or three distinct heavy chains, each having a motor function. To elucidate their functional difference, we compared the in vitro motile properties of Chlamydomonas wild-type OAD containing the ␣, , and ␥ heavy chains and three kinds of mutant OADs, each lacking one of the three heavy chains. For systematic comparison, a method was developed to introduce a biotin tag into a subunit, LC2, which served as the specific anchoring site on an avidin-coated glass surface. Wild-type OAD displayed microtubule gliding in the presence of ATP and ADP, with a maximal velocity of 5.0 m/s, which is approximately 1 ⁄ 4 of the microtubule sliding velocity in the axoneme. The duty ratio was estimated to be as low as 0.08. The absence of the  heavy chain lowered both the gliding velocity and ATPase activity, whereas the absence of the ␥ heavy chain increased both activities. Strikingly, the absence of the ␣ heavy chain lowered the gliding velocity but increased the ATPase activity. Thus, the three heavy chains are likely to play distinct roles and regulate each other to achieve coordinated force production.The rhythmic beating of eukaryotic cilia and flagella is produced by a regulated interaction between axonemal dyneins and outer doublet microtubules (MTs).2 The axonemal dyneins are classified into inner arm dyneins (IADs) and an outer arm dynein (OAD) according to their positions on the outer doublet. Each dynein is an ATPase complex composed of one to three heavy chains (HCs) and several smaller subunits. The HCs are composed of a head domain that produces a sliding force through an ATP-sensitive interaction with MTs and a tail domain that is stably fixed to the outer doublet A-tubule. In many organisms, OAD exists as a single large molecular complex, whereas the IADs exist as multiple, smaller complexes. Studies using Chlamydomonas reinhardtii mutants showed that IADs are important for the generation of a proper flagellar waveform, whereas OAD is important for the generation of high beat frequency (1, 2), suggesting that different dynein species have distinct functions. Functional diversity is also found among the multiple HCs in a single OAD complex; mutants that lack any one of the three OAD HCs (␣, , and ␥), as well as mutants lacking the entire OAD, display reduced motility, but the degree of the motility defects varies depending on the missing HC (3-5). Thus, each HC apparently has a distinct role in OAD function. An important challenge is to elucidate how different HCs share their roles in the OAD complex to produce the overall movement.In accordance with in vivo observations, assays of in vitro MT gliding on dynein-coated surfaces have revealed motility differences among different outer arm HCs. In sea urchin OAD, which contains two HCs (␣ and ), a partial assembly that contains the  HC and an intermediate chain is capable of translocating MTs, whereas the ␣ HC is not (6 -8). In Chlamydomonas OAD, the velocity of in vitro MT gliding induced by partial OAD as...