While red-shifted channelrhodopsin has been shown to be highly effective in activating CNS neurons in freely moving Drosophila, there were no existing high-throughput tools for closed-loop, behavior-dependent optogenetic stimulation of Drosophila. Here, we present SkinnerTrax to fill this void. SkinnerTrax stimulates individual flies promptly in response to their being at specific positions or performing specific actions. Importantly, SkinnerTrax was designed for and achieves significant throughput with simple and inexpensive components.peer-reviewed) is the author/funder. All rights reserved. No reuse allowed without permission.The copyright holder for this preprint (which was not . http://dx.doi.org/10.1101/080614 doi: bioRxiv preprint first posted online Feb. 1, 2017; 3
Main textArtificially stimulating or inhibiting neurons is an important tool for unraveling the neural mechanisms that control animal behavior. A widely used method of stimulation is optogenetics, where channelrhodopsin is expressed in the neurons of interest, allowing them to be activated with high temporal resolution using light pulses. In Drosophila, targeted expression of channelrhodopsin is made easy by techniques like the Gal4-UAS system, and no surgery is needed to enable light delivery when using red-shifted channelrhodopsin 1, 2 as red light penetrates Drosophila sufficiently well. Several recent reports 3-6 have demonstrated the effectiveness of this approach in assessing whether activating specific neurons is sufficient to drive specific behaviors. A more sophisticated application of optogenetics, however, is to stimulate neurons of interest with a closed-loop system in real-time response to the fly's positions and actions. Such application is critical for elucidating the roles of specific neurons in several important behavioral tasks such as operant learning.Existing systems that allow such behavior-dependent stimulation have not been designed for high throughput. Two recent advanced systems, FlyMAD 7 and ALTOMS 8, 9 , target a laser to flies in real-time using mirror galvanometers, which in principle allows sharing the laser between several flies, as suggested in the discussion section of Bath et al. 7 But the scalability of sharing the laser is limited (Supplementary Note 1), and laser-targeting systems require expensive components and complex setups. Thus, for a typical lab laser-targeting systems likely make achieving high throughput prohibitively difficult.Here, we present SkinnerTrax, a system for high-throughput behavior-dependent optogenetic stimulation of Drosophila. Importantly, SkinnerTrax was designed for and achieves peer-reviewed) is the author/funder. All rights reserved. No reuse allowed without permission.The copyright holder for this preprint (which was not . http://dx.doi.org/10.1101/080614 doi: bioRxiv preprint first posted online Feb. 1, 2017; 4 significant throughput with simple and inexpensive components. SkinnerTrax can deliver red light of different intensities and durations to individual flies p...