[1] The in situ data in the Deepwater Navigation Channel (DNC), Yangtze River Estuary (YRE), China, in the dry season 2009, shows spring tides associated with greater maximum velocities, more mixing, less stratification, and diffused fluid mud; whereas neap tides are associated with smaller maximum velocities, greater stratification, inhibited mixing, and stratified fluid muds. The balance of salt flux indicates the seaward salt transport is dominated by fluvial flows, and the landward salt transport is generated by compensation flows during spring tides, but shear effects during neap tidal cycles. The balance of suspended sediment flux illustrates the offshore sediment transport is dominated by fluvial flows as well, but the onshore transport is induced by tidal-pumping effects on spring tides, and shear effects on neaps. The suspended sediment transport is strongly affected by the salinity distribution and salinity-gradient-induced stratification in the DNC. The spring-neap asymmetry is generated by the estuarine gravitational circulation during low-flow conditions; while the flood-ebb asymmetric stratification within a tidal cycle is due to the semidiurnal tidally movement of the salt front.