The zebrafish (Danio rerio) is a model species that is used to study the circadian clock. it possesses light-entrainable circadian clocks in both central and peripheral tissues, and its core circadian factor cryptochromes (CRYs) have diverged significantly during evolution. In order to elucidate the functional diversity and involvement of cRYs in photoperiodic mechanisms, we investigated the daily expression profiles of six Cry transcripts in central (brain and eye) and peripheral (fin, skin and muscle) tissues. the zCry genes exhibited gene-specific diurnal conserved variations, and were divided into morning and evening groups. notably, zCry1ab exhibited biphasic expression profiles in the eye, with peaks in the morning and evening. comparing ocular zCry1ab expression in different photoperiods (18L:6D, 14L:10D, 10L:14D and 6L:18D) revealed that zCry1ab expression duration changed depending on the photoperiod: it increased at midnight and peaked before lights off. zCry1ab expression in constant light or dark after entrainment under long-or short-day conditions suggested that the evening clock and photic input pathway are involved in photoperiod-dependent zCry1ab expression. Laser microdissection followed by qRt-pcR analysis showed that the evening peak of zCry1ab was likely ascribed to visual photoreceptors. These results suggest the presence of an eye-specific photoperiodic time measurement served by zCry1ab.The circadian clock consists of three parts: the input pathway(s), the oscillation system and the output pathway(s). Light is the most important signal that activates the input pathway to synchronize the oscillator with daily external cycles. The oscillator generates time signals to control physiological circadian functions through the output pathway. Internal time signals are integrated with the environmental light signal to measure day length, which triggers seasonal photoperiodic responses in many organisms living in temperate zones 1 .The zebrafish (Danio rerio) circadian clock is one of the most studied among fish species, and is reported to exist in not only the central tissues but also the embryo, larva, peripheral tissues and cultured cells (refs. 2-11 in Table 1 , refs. 12-15 ). These zebrafish circadian clocks are directly light-entrainable and this feature is also seen in the other fish cells 16 in contrast to the mammalian circadian clocks that are not light-entrainable except for those in the eye.Among vertebrate core clock components such as period (PER), CLOCK, BMAL and cryptochrome (CRY) proteins, CRYs have both a wide evolutionary background and divergent molecular functions 6 . CRYs are structurally classified into several groups, and together form a large protein family with the photo repair enzymes, photolyases (PHRs). Among CRY/PHR family proteins, animal-type CRYs (CRY1 and CRY2) play a central role in the circadian clock oscillator. Animal-type CRY1 and CRY2 function as transcriptional repressors in the core loop of the circadian clock oscillation system 17,18 , while fruit fly CRY (...