“…It is expected that short‐term (i.e., daily) variation is for the most part driven by changes in the primary physical drivers of biochemical reactions via light and temperature and that in the longer‐term biological structure of an aquatic ecosystem is driven by changes in both the primary and secondary drivers (Kendrick & Huryn, 2015; Ulseth, Bertuzzo, Singer, Schelker, & Battin, 2018) with resulting shifts in the biological communities. Current ecosystem metabolism models can account for the short term variation by estimating standardized metrics of photosynthesis to irradiance (Beaulieu et al, 2013; Holtgrieve et al, 2010; Phillips, 2020) and temperature sensitivity coefficients of ER (Jankowski & Schindler, 2019; Phillips, 2020; Song et al, 2018). Only recently have metabolism models been developed to explicitly consider longer‐term dynamics and latent biological variables such as autotrophic and heterotrophic biomass (Segatto et al, 2020).…”