The promise of islet cell transplantation cannot be fully realized in the absence of improvements in engraftment of resilient islets. The marginal mass of islets surviving the serial peritransplant insults may lead to exhaustion and thereby contribute to an unacceptably high rate of intermediate and long-term graft loss. Hence, we have studied the effects of treatment with alpha 1-antitrypsin (AAT) in a syngeneic nonautoimmune islet graft model. A marginal number of syngeneic mouse islets were transplanted into nonautoimmune diabetic hosts and islet function was analyzed in control and AAT treated hosts. In untreated controls, marginal mass islet transplants did not restore euglycemia. Outcomes were dramatically improved by short-term AAT treatment. Transcriptional profiling identified 1,184 differentially expressed transcripts in AAT-treated hosts at 3 d posttransplantation. Systems-biology-based analysis revealed AAT down-regulated regulatory hubs formed by inflammation-related molecules (e.g., TNF-α, NF-κB). The conclusions yielded by the systems-biology analysis were rigorously confirmed by QRT-PCR and immunohistology. These data suggest that short-term AAT treatment of human islet transplant recipients may be worthy of a clinical trial.type 1 diabetes | insulin | nonobese diabetic mice | immune response I n theory, islet transplantation offers great hope for eluding the complications of type 1 diabetes (T1D) or whole-organ pancreas transplantation. However, the clinical application of islet transplantation has been slowed by the inability to use islets from a single donor to restore euglycemia, even short term, in most islet allograft recipients and by the unacceptably high 5 y failure rate even for islet transplants that function at 1 y posttransplantation (1). As a result of nonimmunologic processes, many islets perish during harvest, purification, and shortly following transplantation (2, 3). Moreover, the marked nonimmunologic loss of islets may render the recipient prone to β-cell exhaustion long term (4). A multicenter review of autologous islet transplant outcomes reveals 31% of the autografts lose function within 7 d and 50% of the grafts that function at 7 d lose function within a year (5). Until these potentially linked problems, early nonimmunologic islet cell death, and failure to obtain enduring graft function are resolved, whole-organ transplantation, an intrusive and complication-prone procedure, will remain the transplant of choice because a single whole organ provides islet cell mass, sufficient to control hyperglycemia short and long term.Alpha 1-antitrypsin (AAT), an acute phase reactant serine protease inhibitor with antiinflammatory, antileukocyte migratory, antithrombotic, and antiapoptotic effects (6-9), exerts cytoprotective effects upon islets in vitro (8, 10). As expression of AAT sharply rises in response to inflammation, AAT may function to limit the duration and magnitude of inflammation (11). Furthermore, short-term AAT treatment restores euglycemia and self-tolerance to islets...