A system of non-Markovian transport equations is obtained for the non-equilibrium one-particle distribution function of particles and the non-equilibrium average value of the density of the potential energy of the interaction of the system particles far from the equilibrium state. Expressions for entropy, the partition function of the non-equilibrium state of the system, as well as non-equilibrium thermodynamic relations were obtained. The generalized structure of transfer nuclei is revealed in detail with the selection of short-range and long-range contributions of interactions between particles. The connection of transport nuclei with generalized diffusion coefficients, friction in the space of coordinates and momentum and the potential part of the thermal conductivity coefficient is established.