Cell wall proteins (CWP) are essential constituents of plant cell walls involved in modifications of cell wall components, wall structure, signaling, and interactions with plasma membrane proteins at the cell surface. The application of proteomic approaches to the cell wall compartment raises important questions: Are there technical problems specific to cell wall proteomics? What kinds of proteins can be found in Arabidopsis walls? Are some of them unexpected? What sort of post-translational modifications have so far been characterized in CWP? The purpose of this review is to discuss the experimental results obtained so far using protomics, as well as some of the new questions challenging future research.
Glossary
AGP (arabinogalactan proteins):cell wall highly glycosylated HRGP that contain repetitive motifs such as (Ser, Thr, Ala)-Hyp-(Ser, Thr, Ala)-Hyp or (Ser, Thr, Ala)-Hyp-Hyp. AG (arabinogalactan)-peptides: AGP that have a predicted mature protein backbone of 10 to 13 amino acid residues. BBE: berberine-bridge (S)-reticulin:oxygen oxidoreductases. CWP: cell wall proteins. Extensins: cell wall structural HRGP, with numerous Ser-Hyp n (n≥3) motifs separated by Tyr-, Lys-, His-and Val-rich regions. GAP (glycosylphosphatidylinositol anchored proteins): proteins that are lipid-anchored to the external phase of the plasma membrane. GH (glycoside hydrolases): enzymes that hydrolyze the glycosidic bond between two carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. HRGP: hydroxyproline-rich glycoproteins, i.e. extensins and AGP. Lectins: structurally diverse proteins that bind to specific carbohydrates. LRR (leucine-rich repeat): short sequence motifs having diverse functions and cellular locations, usually involved in protein-protein interactions. PME (pectin methylesterases): enzymes that catalyze the de-esterification of pectin into pectate and methanol. Proteome: the complete profile of proteins expressed, at a given time and environmental conditions, in a given organ, tissue, or cell. PRP (proline-rich proteins): structural CWP rich in proline residues. Transcriptome: the complete collection of transcribed elements of the genome.