Topological Identification Criteria, Stability, and Relevance of Pentagonal Nanochannels in Amorphous Ice

Abstract

Considering the potential importance of pentagonal nanochannels (PNCs) in determining the structure of the amorphous ice, we introduce topological criteria to identify the PNCs with an optimal fivefold symmetric environment. The basic building block in our criteria, termed as a bicyclo octamer, is an axisymmetric cluster formed by combination of three 6-membered boat-shaped rings. This bicyclo octamer unit serves as a seamless interface of the PNCs with cubic-hexagonal stacking patterns of the amorphous ice. This interface results in a fivefold symmetric mesostructure of relatively high stability: a central PNC with extended five branches of two-dimensional (2-D) hexagonal (wurtzite) crystalline monolayers stacked with cubic (diamond) layers. We also unearth a hierarchy of symmetric structures in amorphous ice: the PNCs, together with dodecahedron cages, form a network consisting of (nearly) equilateral triangular patterns. At the next hierarchical level of symmetry, such triangular patterns combine to form triangular pyramids with dodecahedron cages as the vertices, PNCs as the edges, and confined 2-D hexagonal crystalline monolayers as the triangular faces of the pyramids. The central core of the pyramids consists of cubic (diamond) regions with a strong local tetrahedral order. The overall structure of the amorphous ice states is found to be profoundly affected by PNCs. Specifically, in states with a relatively large number of PNCs, the cubic-hexagonal stacking is primarily in the form of hexagonal crystalline monolayers stacked from both sides with cubic crystalline layers.

Homogeneous Nucleation of Sheared Liquids: Advances and Insights from Simulations and Theory

“…The analysis of microscopic structures is impervious to CNT-based approaches which, in fact, usually neglect structural effects completely in rate calculations. However, stacking faults and fivefold defect structures [148], detected during the quiescent nucleation of supercooled water [149][150][151], have been found to emerge as precursors to nucleation, even before critical nuclei appear [87]. Furthermore, there is long-standing evidence that morphological and structural characteristics of emergent crystalline structures have a non-trivial impact on the sheared nucleation process [152].…”