Electric double-layer capacitors (EDLCs) are important energy storage devices that have high potential for use in existing and emerging markets such as electric vehicles, portable electronic devices, and smart grid management. This is due to their high power density and long lifetime, which are a result of their simple ion adsorption mechanism for charge storage. A significant and ongoing effort is being made to improve the energy density of ELDCs, so that they financially compete with batteries. EDLC improvement has mainly been facilitated through the investigation and discovery of novel solid and liquid materials.This topic was studied with the motivation of investigating charge storage mechanisms in EDLCs with configurations where traditional models are not appropriate to describe the phenomena observed in the literature. Significantly, in small pores anomalous results challenged the traditional beliefs of the electric double layer (EDL) and the accessibility of ions to sub-nanometre micropores.Highly dense RTIL electrolyte, which are non-dilute, and can also be solvent free, also can't be described by traditional models and display complex phenomena such as charge over-screening.This thesis evaluates molecular and charge storage mechanisms at solid-liquid interfaces of room temperature ionic-liquid (RTIL) electrolytes and porous carbon electrodes. Changes in charge storage mechanisms with the addition of an aprotic solvent, acetonitrile (ACN,) to the RTIL, was also investigated in simple slit-pores, and complex carbon electrode structures. The contact angle of RTIL drops was also investigated under a variety of conditions. The methodology of molecular dynamics (MD) simulation was chosen for this thesis as it offers unique benefits to approach the problem of understanding molecular phenomena in ELDCs. MD simulation was selected as it is possible to systematically control variables of interest to a high level of accuracy. In this way, theoretical structures, or models derived from real materials, can be analysed. Significantly, analysis of charge storage mechanisms occurring within small pores, or with dense electrolytes, can be completed with relative ease, unlike with experiments which require difficult or expensive in situ experimental techniques.The analysis began with studying simple slit-pore electrodes to provide a framework for comparison with more complex electrode materials. The charge storage mechanism was tested under a variety of conditions. Most interestingly, capacitance was found to have a moderate dependence on the amount of ACN in the electrolyte, which contrasts with previously noted behaviour at flat walls. Additionally, solid-like behaviour was observed for the bulk electrolyte in certain systems.iii We present the first results for a MD simulation of the RTIL EMIMBF 4 in model CDC electrodes at a potential of 1 V, with systematic addition of ACN to the electrolyte. Our simulations showed that the mechanism of charge storage is different between the positive and negative electrode,...