The use of Uncrewed Aerial Vehicles (UAVs) is becoming a preferred method for supporting integrated coastal zone management, including cultural heritage sites. Loko i′a, traditional Hawaiian fishponds located along the coastline, have historically provided sustainable seafood sources. These coastal cultural heritage sites are undergoing revitalization through community-driven restoration efforts. However, sea level rise (SLR) poses a significant climate-induced threat to coastal areas globally. Loko i′a managers seek adaptive strategies to address SLR impacts on flooding, water quality, and the viability of raising native fish species. This study utilizes extreme tidal events, known as King Tides, as a proxy to estimate future SLR scenarios and their impacts on loko i′a along the Keaukaha coastline in Hilo, Hawai′i. In situ water level sensors were deployed at each site to assess flooding by the loko i′a type and location. We also compare inundation modeled from UAV-Structure from Motion (SfM) Digital Elevation Models (DEM) to publicly available Light Detection and Ranging (LiDAR) DEMs, alongside observed flooding documented by UAV imagery in real time. The average water levels (0.64 m and 0.88 m) recorded in this study during the 2023 King Tides are expected to reflect the average sea levels projected for 2060–2080 in Hilo, Hawai′i. Our findings indicate that high-resolution UAV-derived DEMs accurately model observed flooding (with 89% or more agreement), whereas LiDAR-derived flood models significantly overestimate observed flooding (by 2–5 times), outlining a more conservative approach. To understand how UAV datasets can enhance the resilience of coastal cultural heritage sites, we looked into the cost, spatial resolution, accuracy, and time necessary for acquiring LiDAR- and UAV-derived datasets. This study ultimately demonstrates that UAVs are effective tools for monitoring and planning for the future impacts of SLR on coastal cultural heritage sites at a community level.