Background
Plant mitochondria exist and function in a special way, this third-kind genetic material is essential for plant growth and development. However, its complex and highly variable genome structure lead to a poor understanding compared with chloroplasts.
Results
With the help of HIFI sequencing, we obtained new insights of their structure and functions. Machilus pauhoi (Magnoliaceae), an indigenous species, showcases a profusion of metabolites, elegant growth traits like bright red fresh leaves and straight trunk. Thus, we initially curated complete reference mitochondrial genomes for Machilus pauhoi. Though still regarded as complex structure, a 775 Kb two-circle physical map exhibiting simplification trend through one long lateral repeat region in ANA grade. Comparisons of consistent sequences revealed significant large-scale and inclined rearrangements within both cytoplasmic and nuclear genomes. Furthermore, the identification of lateral transfers from chloroplast to mitochondrial genome highlighted the consistent capture of functional genes such as petN. Besides, transferred sequences displayed chromosomal preference in nuclear genome, including genes like cytb, ATP9 and mRpL2. Aberrant selective pressure occurred for ccmB in Magnoliales though mitogenomes bore a greater burden of pressure compared to genes in the chloroplast. We also presented the expression of mtgenes , emphasizing a relatively functional concentration in no chloroplast tissues.
Conclusion
Eventually, the assembly of our newly acquired mitogenome contributes valuable insights into the evolutionary patterns observed in higher plant mitogenomes, thereby establishing a robust foundation for future industrial advancements in functional exploration of forest species.