The fern Dicranopteris linearis (Gleicheniaceae) from China is a hyperaccumulator of Rare Earth Elements (REEs), but little is known about its ecophysiology in relation to REEs. This study aimed to clarify tissue-tissue and organ-level distribution of REEs via synchrotronbased X-ray fluorescence microscopy (XFM).• The results show that La + Ce are mainly co-localized with Mn in the pinnae and pinnules, with the highest concentrations in necrotic tissues.• In the cross-sections of the pinnules, midveins, petioles and stolons La + Ce and Mn are enriched in the epidermis, vascular bundles, and pericycle (midvein). In these tissues, Mn is localised mainly in the cortex and mesophyll compared to La + Ce in these cross-sections.• We hypothesize that REEs transpiration flow in the veins is initially restricted by the pericycle between vascular bundle and cortex, whilst excess REEs are transported by evaporation and co-compartmentalized with Mn in the necrotic tissues and epidermis in an immobile form, possibly an Si-coprecipitate.