To investigate the role of Epstein-Barr virus (EBV) in epithelial tumors, we compared the expression pattern of cellular genes in the EBV-infected gastric carcinoma cell line, NU-GC-3, and its uninfected control. Subtractive suppression hybridization (SSH) was combined with high-density DNA array screening to identify differentially expressed genes. We have discovered that EBV infection upregulated a truncated variant of human basic hair keratin 1 (hHb1-⌬N), a gene that had previously been identified in metastatic breast carcinoma. We verified the differential expression of hHb1-⌬N in 3 independent EBV-positive and -negative NU-
Key words: Epstein-Barr virus (EBV); subtractive suppression hybridization (SSH); gastric carcinoma; truncated basic hair keratin 1 (hHb1-⌬N)Epstein-Barr virus (EBV) is a ubiquitous human herpes virus, closely associated with both lymphoid and epithelial malignancies. 1 The regular association of EBV with nasopharyngeal carcinoma (NPC) and its more occasional association with gastric carcinoma are well established. 1-3 Although the interaction between EBV and lymphoid cells has been studied extensively, the mechanism of EBV infection and the role of EBV in epithelial tumors are not understood.Progress in this field was delayed by the lack of in vitro models for the study of EBV infection in epithelial cells. We have established an efficient infection system for epithelial cells by using selectable neomycin-resistance gene (Neo R ) carrying EBV recombinants. 4 -6 Carcinoma lines were regularly infectable. The derived virus-convertants expressed only a limited number of EBV latent genes, such as EBV-determined nuclear antigen 1 (EBNA1), EBVencoded small RNAs (EBERs), transcripts from the BamHI-A region (BARF0) and latent membrane protein 2A (LMP2A). This corresponds to the viral gene expression pattern of EBV-positive gastric carcinoma cells in vivo. 3,5,6 We also showed that EBV conversion decreased the serum requirement and increased the agarose clonability, cell motility and tumorigenicity of established carcinoma lines. 7-9 These results indicated that EBV might contribute to the malignant phenotype of epithelial cells in the absence of LMP1 expression. 7 In our study, we compared the expression pattern of cellular genes in an EBV-infected gastric carcinoma cell line, NU-GC-3 10 and its uninfected control. Subtractive suppression hybridization (SSH) 11 was combined with high-density DNA array screening to identify differentially expressed genes. 12, 13 We have discovered that EBV infection upregulated the truncated human basic hair keratin 1 (hHb1-⌬N) identified in metastatic lymph nodes of breast carcinomas. 14
MATERIAL AND METHODS
Culturing EBV-infected and -uninfected carcinoma linesWe previously succeeded in infecting several EBV-negative carcinoma cell lines in vitro with Neo R -carrying EBV recombinants, namely gastric carcinomas NU-GC-3 and AGS, nasopharyngeal carcinoma TWO3 and colon carcinoma DLD1. EBV genes expressed in the EBV-converted clones were EBNA1, EBERs, BARF0 and ...