2015
DOI: 10.1016/j.gene.2015.04.050
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Transcriptome and MassARRAY analysis for identification of transcripts and SNPs for growth traits of the swimming crab Portunus trituberculatus

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Cited by 26 publications
(16 citation statements)
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“…The expression of X-box binding protein 1 (PmXbp1) during ovarian development in wild P. monodon broodstock and association between its SNP and growthrelated parameters were observed: expression of genotype A (corresponding to a T/T349 SNP) was significantly greater than that of juveniles carrying pattern B (corresponding to a T/ C349 SNP) (Prasertlux et al, 2015). The growth-related genes were screened using paired-end sequencing technology in the swimming crab Portunus trituberculatus in China (Lv et al, 2015b). One growth-associated SNP was identified, which was located in hemocyanin as a result of association analysis.…”
Section: Growth Traitsmentioning
confidence: 99%
“…The expression of X-box binding protein 1 (PmXbp1) during ovarian development in wild P. monodon broodstock and association between its SNP and growthrelated parameters were observed: expression of genotype A (corresponding to a T/T349 SNP) was significantly greater than that of juveniles carrying pattern B (corresponding to a T/ C349 SNP) (Prasertlux et al, 2015). The growth-related genes were screened using paired-end sequencing technology in the swimming crab Portunus trituberculatus in China (Lv et al, 2015b). One growth-associated SNP was identified, which was located in hemocyanin as a result of association analysis.…”
Section: Growth Traitsmentioning
confidence: 99%
“…Measurement of miRNA expression levels and elucidation of the regulatory relationship between miRNA and its corresponding mRNA target are important to clarify pathways and biological processes including biotic and abiotic stress responses (Rao et al 2014). Transcriptome analyses of P. trituberculatus growth (Lv et al 2015) and responses to salinity challenged (Lv et al 2013) by high-throughput nextgeneration sequencing technology have been reported; however, the study or experimental identification of miRNAs has been no performed.…”
Section: Electronic Supplementary Materialsmentioning
confidence: 99%
“…Sequencing chromatograms were visually analyzed using the Vector NTI Suite 11.0 (Invitrogen), and SNPs were detected as overlapping nucleotide peaks. SNPs were genotyped in the 90 crabs from SG and RG with the MassARRAY platform (Sequenom, San Diego, CA, USA) by the way of Lv (Lv et al 2015). Each SNP site allele frequencies were calculated by SPSS 17.0 and processed the Pearson's chi-square test to confirm their association with salt-tolerant trait.…”
Section: Single Nucleotide Polymorphism Loci Detection and Genotypingmentioning
confidence: 99%