2015
DOI: 10.1186/s12864-015-1568-3
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Transcriptome and venom proteome of the box jellyfish Chironex fleckeri

Abstract: BackgroundThe box jellyfish, Chironex fleckeri, is the largest and most dangerous cubozoan jellyfish to humans. It produces potent and rapid-acting venom and its sting causes severe localized and systemic effects that are potentially life-threatening. In this study, a combined transcriptomic and proteomic approach was used to identify C. fleckeri proteins that elicit toxic effects in envenoming.ResultsMore than 40,000,000 Illumina reads were used to de novo assemble ∼ 34,000 contiguous cDNA sequences and ∼ 20,… Show more

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Cited by 100 publications
(109 citation statements)
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“…Further, Dutertre et al extended the discovery of conopeptide toxins from cone snails by integrating mRNA sequencing with high resolution MS [42]. In another study, new protein toxins could be identified in jellyfish, whose genome is yet to be sequenced, by integrating de novo assembled transcripts to create a proteomic search database [36]. Similar studies have been rewarding for high-throughput re-annotation of various other genomes [43].…”
Section: Transcriptome As a Template For Proteomics Data Analysismentioning
confidence: 99%
“…Further, Dutertre et al extended the discovery of conopeptide toxins from cone snails by integrating mRNA sequencing with high resolution MS [42]. In another study, new protein toxins could be identified in jellyfish, whose genome is yet to be sequenced, by integrating de novo assembled transcripts to create a proteomic search database [36]. Similar studies have been rewarding for high-throughput re-annotation of various other genomes [43].…”
Section: Transcriptome As a Template For Proteomics Data Analysismentioning
confidence: 99%
“…In-gel digestion methods for the mass spectrometric identification of exosomal proteins were performed by modification of previously published method [34]. In brief, each sample lane was cut into 24 gel slices and destained twice with 200 mM ammonium bicarbonate in 50 % acetonitrile solution for 45 min at 37 °C, desiccated using a vacuum centrifuge and then resuspended with 20 mM dithiothreitol (DTT) in 25 mM ammonium bicarbonate solution and reduced for 1 h at 65 °C.…”
Section: Methodsmentioning
confidence: 99%
“…Tag-based peptide search strategies can be very helpful in detecting mutated peptides from the related reference sequence. The explosive growth of RNA-seq mediated high-throughput transcriptomics allows the profiling of expressed transcripts that can be used to identify proteins even in the absence of the genome sequence [61]. Such strategies are especially useful in unexplored taxonomic nodes to discover proteins that are not represented in related species.…”
Section: Protegenomic Strategiesmentioning
confidence: 99%