Transcriptomic landscape of tomato traditional long shelf-life landraces under low water regimes

Landi, Simone; Punzo, Paola; Nurcato, Roberta; Albrizio, Rossella; Sanseverino, Walter; Cigliano, Riccardo Aiese; Giorio, P.; Fratianni, Florinda; Batelli, Giorgia; Esposito, Sergio; Grillo, Stefania

doi:10.1016/j.plaphy.2023.107877

Cited by 6 publications

(2 citation statements)

References 53 publications

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“…Regions of genes containing SNPs were revealed in the landraces’ genomes after comparison with the tomato reference genome. Enriched gene ontology (GO) categories also showed that genes affecting oxidoreductase activity, water use efficiency, nucleotide salvation, and lipid biosynthesis-related processes were enriched among up-regulated DEGs [ 133 ].…”

Section: Application Of New Genomic Technologies In Landraces and Ind...mentioning

confidence: 99%

“…It is important to highlight the role of tomato landraces for their unique adaptability under various environmental stressors along with their high-quality features, as they comprise a powerful tool in breeders’ hands to deal with the changing climatic conditions worldwide and produce more sustainable products, as well as to meet the demands of consumers for healthier and safer food resources [ 137 ]. The application of current genomic tools and technologies such as MAS, NGS, and GWAS can contribute effectively to the development of faster and sustainable new tomato breeding strategies, creating commercial well adapted to the changing environmental conditions varieties through landraces germplasm utilization [ 16 , 129 , 133 ].…”

Section: Application Of New Genomic Technologies In Landraces and Ind...mentioning

confidence: 99%

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Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding

Lazaridi,

Kapazoglou,

Gerakari

et al. 2024

Plants

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Landraces and indigenous varieties comprise valuable sources of crop species diversity. Their utilization in plant breeding may lead to increased yield and enhanced quality traits, as well as resilience to various abiotic and biotic stresses. Recently, new approaches based on the rapid advancement of genomic technologies such as deciphering of pangenomes, multi-omics tools, marker-assisted selection (MAS), genome-wide association studies (GWAS), and CRISPR/Cas9 gene editing greatly facilitated the exploitation of landraces in modern plant breeding. In this paper, we present a comprehensive overview of the implementation of new genomic technologies and highlight their importance in pinpointing the genetic basis of desirable traits in landraces and indigenous varieties of annual, perennial herbaceous, and woody crop species cultivated in the Mediterranean region. The need for further employment of advanced -omic technologies to unravel the full potential of landraces and indigenous varieties underutilized genetic diversity is also indicated. Ultimately, the large amount of genomic data emerging from the investigation of landraces and indigenous varieties reveals their potential as a source of valuable genes and traits for breeding. The role of landraces and indigenous varieties in mitigating the ongoing risks posed by climate change in agriculture and food security is also highlighted.

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Section: Application Of New Genomic Technologies In Landraces and Ind...mentioning

confidence: 99%

Section: Application Of New Genomic Technologies In Landraces and Ind...mentioning

confidence: 99%

Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding

Lazaridi,

Kapazoglou,

Gerakari

et al. 2024

Plants

View full text Add to dashboard Cite

show abstract

Isolating Water and Nitrogen Stress Tolerant Genotypes Among Tomato Landraces and Solanum pennellii Backcross Inbred Lines

Cirillo,

Ruggiero,

Caullireau

et al. 2024

J Plant Growth Regul

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Combined salt and low nitrate stress conditions lead to morphophysiological changes and tissue-specific transcriptome reprogramming in tomato

Batelli,

Ruggiero,

Esposito

et al. 2024

Plant Physiology and Biochemistry

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Transcriptomic landscape of tomato traditional long shelf-life landraces under low water regimes

Cited by 6 publications

References 53 publications

Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding

Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding

Isolating Water and Nitrogen Stress Tolerant Genotypes Among Tomato Landraces and Solanum pennellii Backcross Inbred Lines

Combined salt and low nitrate stress conditions lead to morphophysiological changes and tissue-specific transcriptome reprogramming in tomato

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