A multifunctional mesoporous drug delivery system that contains fluorescent imaging molecules, targeting proteins, and pH-sensitive nanovalves was developed and tested. Three nanovalve-MSN systems (NV-MSNs) with varied quantities of nanovalves on the surface were synthesized. These systems were characterized and tested to optimize the trade-off between coverage of nanovalves on the MSNs to effectively trap and deliver cargo, and the remaining underivatized silanol groups that can be used for protein attachments. The NV-MSN system that has satisfactory coverage for high loading and spare silanols was chosen, and transferrin (Tf) was integrated into the system. Abiotic studies were performed to test the operation of the nanovalve in the presence of the protein. In vitro studies were carried out to demonstrate the autonomous activation and function of the nanovalves in the system under biological conditions. Enhanced cellular uptake of the Tf-modified MSNs was seen using fluorescence microscopy and flow cytometry in MiaPaCa-2 cells. The MSNs were then tested using in SCID mice, which showed that both targeted and untargeted NV-MSN systems were fully functional to effectively deliver cargo. These new multifunctional nanoparticles serve proof of concept of nanovalve functionality in the presence of large proteins and demonstrate another dimension of MSN-based theranostic platforms.