Over the last century, repeated emergence events within the Candidatus Liberibacter taxon have produced pathogens with devastating effects. Presently, our knowledge of Ca. Liberibacter diversity, host associations, and interactions with vectors is limited due to a focus on studying this taxon within crops. But to understand traits associated with pathogen emergence it is essential to study pathogen diversity in wild vegetation as well. Here, we explore historical native host plant associations and diversity of the cosmopolitan species, Ca. L. psyllaurous, also known as Ca. L. solanacearum, which is associated with psyllid yellows disease and zebra chip disease, especially in potato. We screened tissue from herbarium samples of three native solanaceous plants collected near potato-growing regions throughout Southern California over the last century. This screening revealed a new haplotype of Ca. L. psyllaurous (G), which, based on our sampling, has been present in the U.S. since at least 1970. Phylogenetic analysis of this new haplotype suggests that it may be closely related to a newly emerged North American haplotype (F) associated with zebra chip disease in potatoes. Our results demonstrate the value of herbarium sampling for discovering novel Ca. Liberibacter haplotypes not previously associated with disease in crops. Plant pathogen emergence is a major threat to food security 1 and occurs through multiple, non-mutually exclusive pathways 2. For example, a plant pathogen may be a previously unknown or undetected organism, or an organism that was once non-pathogenic to its host but has evolved pathogenic traits over time. Alternatively, the plant pathogen may already be known, but has spread to, and proliferated within, a new geographic area or host population. An outbreak may also represent the re-emergence of a plant pathogen whose incidence had declined significantly in the past but, more recently, increased over a short period. These pathways of disease emergence are complex, and thus require consideration of microbe-plant interactions in both managed and unmanaged systems. With advances in sequencing technologies and development of methods to overcome detection challenges in non-crop hosts 3 , inclusion of wild vegetation in microbial diversity and pathogenicity studies is enabling the discovery and characterization of novel strain types 4 , and expanding our understanding of the processes underlying pathogen emergence 5-8. Among plant pathogens that have emerged as serious threats to food production in the last 100 years are those within the taxon 'Candidatus'(Ca.) Liberibacter 9 (Fig. 1). Ca. Liberibacter species are largely unculturable members of the Alphaproteobacteria class in the Proteobacteria phylum 10. Over the last decade, eight species of Ca. Liberibacter have been identified around the world following emergence as phloem-limited plant pathogens in mostly crop systems (cited within Fig. 1). Each known Ca. Liberibacter species is also associated with one or more herbivorous insect hosts (psyllid...