We optimized methanol treatment in paraformaldehyde-fixed slices for immunofluorescent staining of ependymal basal bodies in brain ventricles. As 100% methanol induced severe deformations to the slices (including rolling and folding over), we tried to decrease methanol concentration. We found that 33.3% to 75% methanol could result in ideal immunostaining of basal bodies without inducing obvious deformations. Instead of treating slices at À 201C (without proper cryoprotection measurements) as suggested in previous studies, we carried out methanol treatment at room temperature. Our modified protocol can not only raise immunostaining efficiency in tissue slices, it may also prevent potential freezing damages to the samples. I mmunohistochemical staining efficiency largely depends on tissue processing. 1-4 As a tissue processing reagent, methanol has been widely used to fix or permeabilize cultured cells. [5][6][7][8] It was also used to treat tissue blocks and slices. 9,10 To achieve the best immunostaining, cells need to be treated with 100% methanol at À 201C for 10 to 20 minutes. [10][11][12] We noticed that none of these studies or protocols adopted proper cryoprotection measurements. Without effective cryoprotection, treatment at À 201C might bring freezing damages to biochemical identities and/or morphologic features of the cells. 3 These morphologic and biochemical alterations may result in inconsistent immunostaining results, 13 as suggested in another study. 14 In the present study, we checked the effects of methanol treatment on paraformaldehyde-fixed brain slices before immunofluorescent staining. To our surprise, 100% methanol would result in severe deformations to the slices including rolling and folding over. We then tested various concentrations of methanol to the slices in different conditions.
MATERIALS AND METHODSA total of 12 C57/Bl6 male mice (Jackson Laboratory, Bar Harbor, ME) at 6 to 8 weeks were used. The procedures and protocols for all animal studies were approved by Institutional Animal Care and Use Committees of Tongji University, Children's Hospital of Philadelphia, and University of Pennsylvania, in accordance with international guidelines on the ethical use of animals (National Research Council, 1996). After the mice were deeply anesthetized and perfused, the brains were removed and postfixed, and then vibratome slices were cut at 50 mm and collected in 6 serials in PBS as reported previously. 15 The slices were treated with different concentrations of methanol (0%, 33.3%, 50%, 75%, 95%, and 100%) at room temperature (RT) for 30 minutes or at À 201C for 10 minutes. Before methanol treatment at À 201C, slices were immersed in 20% sucrose overnight and then 30% sucrose for 2 days at 41C, except for control ones. The slices were then permabilized with 0.3% triton X-100 and blocked with a mixture of 5% normal goat serum and 1% bovine serum albumin before free-floating immunostaining.For double immunofluorescent staining, we incubated the slices with a mouse monoclonal antibody ...