Cryptosporidium is an obligate intracellular apicomplexan parasite, responsible for significant morbidity and mortality in both humans and animals. It causes protracted and life-threatening diarrhea in HIV-infected individuals, along with some extra-intestinal symptoms. It also causes infection in other immunocompromised hosts like organ transplant recipients, patients with hematological malignancies, though there are fewer reports on this issue. Cryptosporidial infection is transmitted through feco-oral route by contaminated food and water. Oocyst of Cryptosporidium species is highly resistant to common water disinfection procedures, which has led to waterborne Cryptosporidium outbreaks, in both large and small communities. UV radiation, flocculation, sedimentation, and filtration are efficient against water contamination by cryptosporidial oocysts. Diagnosis of the parasite is based mainly on acid-fast staining, fluorescent stains like auramine-carbolfuchsin stain, ELISA of specific antigens, as well as antibodies, and polymerase chain reaction. The principle defense mechanism against Cryptosporidium sp. is cell-mediated immunity, particularly macrophage activation by CD4 ? T cells-derived cytokines. Th1 response assists in developing resistance to infection, whereas activation of Th2 cells results in increased parasite survival and exacerbation of lesions, due to macrophage suppressive action of Th2 cytokines, or during recovery stages of the infection. Immune restoration is very important for treatment. Nitazoxanide and Paramomycin are the mainstay of therapy, however complete elimination of the parasite is difficult.