Thermotoga maritima is a Gram-negative, hyperthermophilic bacterium whose peptidoglycan contains comparable amounts of L-and D-lysine. We have determined the fine structure of this cell-wall polymer. The muropeptides resulting from the digestion of peptidoglycan by mutanolysin were separated by high-performance liquid chromatography and identified by amino acid analysis after acid hydrolysis, dinitrophenylation, enzymatic determination of the configuration of the chiral amino acids, and mass spectrometry. The high-performance liquid chromatography profile contained four main peaks, two monomers, and two dimers, plus a few minor peaks corresponding to anhydro forms. Peptidoglycan (or murein) is a giant macromolecule whose main function is the protection of the cytoplasmic membrane against the internal osmotic pressure. It is composed of alternating residues of N-acetylglucosamine (GlcNAc) and N-acetylmuramic acid (MurNAc) 2 cross-linked by short peptides (1). The composition of the peptide stem in nascent peptidoglycan is L-Ala 1 -␥-D-Glu 2 -X 3 -D-Ala 4 -D-Ala 5 , where X is most often meso-diaminopimelic acid (meso-A 2 pm) or L-lysine in Gram-negative and Gram-positive species, respectively (2, 3). In the mature macromolecule, the last D-Ala residue is removed. Cross-linking of the glycan chains generally occurs between the carboxyl group of D-Ala at position 4 of a donor peptide stem and the side-chain amino group of the diamino acid at position 3 of an acceptor peptide stem (433 cross-links). Cross-linking is either direct or through a short peptide bridge such as pentaglycine in Staphylococcus aureus (2, 3). The enzymes for the formation of the 433 cross-links are active-site serine DDtranspeptidases that belong to the penicillin-binding protein (PBP) family and are the essential targets of -lactam antibiotics in pathogenic bacteria (4). Catalysis involves the cleavage of the D-Ala 4 -D-Ala 5 bond of a donor peptide stem and the formation of an amide bond between the carboxyl of D-Ala 4 and the side chain amine at the third position of an acceptor stem. Transpeptidases of the LD specificity are active-site cysteine enzymes that were shown to act as surrogates of the PBPs in mutants of Enterococcus faecium resistant to -lactam antibiotics (5). They cleave the X 3 -D-Ala 4 bond of a donor stem peptide to form 333 cross-links. This alternate mode of crosslinking is usually marginal, although it has recently been shown to predominate in non-replicative "dormant" forms of Mycobacterium tuberculosis (6).Thermotoga maritima is a Gram-negative, extremely thermophilic bacterium isolated from geothermally heated sea floors by Huber et al. (7). A morphological characteristic is the presence of an outer sheath-like envelope called "toga." Although the organism has received considerable attention for its biotechnological potential, studies about its peptidoglycan are scarce (8 -11), and in particular the fine structure of the macromolecule is still unknown. In their initial work, Huber et al. (7) showed that the comp...