Due to the presence of environmental problems, it is urgent to improve the processes aimed at the processing and purification of hydrocarbon-containing wastes and wastewaters. The review presents the latest achievements in the development of nanostructured catalysts made from different materials that can be used to purify oil-polluted wastewaters (petroleum refinery wastewater, oilfield-produced water, sulfur-containing extracts from pre-oxidized crude oil and oil fractions, etc.) and eliminate components of hydrocarbon pollutants (polyaromatic hydrocarbons, phenols, etc.). The results of the analysis of possible combinations of chemical and biological catalysts for deeper and more effective solutions to the problems are discussed. The possibilities of highly efficient elimination of hydrocarbon pollutants as a result of the hybrid application of nanoparticles (graphene oxide, mesoporous silica, magnetic nanocatalysts, etc.) or catalytic nanocomposites for advanced oxidation processes and biocatalysts (enzymes, cells of bacteria, mycelial fungi, phototrophic microorganisms and natural or artificial microbial consortia) are analyzed.