In chronic lymphocytic leukemia (CLL), the acquisition of new genomic aberrations during the disease course (clonal evolution) is thought to be an infrequent phenomenon but comprehensive analyses are limited. Genomic aberrations were analyzed by fluorescence in situ hybridization (FISH) at various time points during the disease course of 64 CLL patients. Results were correlated with the mutation status of the immunoglobulin heavy-chain variableregion genes (VH) and clinical characteristics. Following a median observation time of 42.3 months (range 23.2-73) after first genetic study, 11 out of the 64 (17%) patients showed clonal evolution with the following newly acquired aberrations: del(17p13) (n=4), del(6q21) (n=3), del(11q23) (n=2), +(8q24) (n=1), and evolution from monoallelic to biallelic del(13q14) (n=3). Interestingly, clonal evolution only occurred among cases with unmutated VH status. The group with clonal evolution showed a higher rate of progression in Binet stage (82% vs. 28%), a possibly greater need for treatment (91% vs. 62% previously untreated patients received their first therapy), and a higher hazard rosk of death (HR = 2.97, 95% CI 1.40-6.27, p=0.004) in multivariable analysis. The estimated median survival time after the occurrence of clonal evolution was 21.7 months. Expansion of the clone with del(17p13) was observed in all patients during treatment, indicating in vivo resistance to therapy. In multivariable Andersen-Gill regression analysis, clonal evolution was identified as an independent prognostic factor for overall survival. Clonal evolution only occurred in CLL with unmutated VH indicating to karyotypic instability as a pathomechanism. Acquisition of genomic aberrations was associated with poor outcome based on multivariable analysis. In vivo resistance to chemotherapy of CLL clones with del(17p13) emphasizes the need for alternative treatment approaches in these patients.Key words: CLL, clonal evolution, genetic instability, p53. 1-7 While the VH status remains stable, genomic aberrations may be acquired over time and it has been suggested that this may partly account for the more aggressive clinical course of CLL with unmutated VH genes.2 Sequential chromosome banding analyses indicated the acquisition of genomic aberrations over time (clonal evolution) as an infrequent phenomenon in CLL.8-11 However, only limited data are available from FISH studies of interphase cells, a more sensitive method for the detection of genomic aberrations in CLL. [12][13][14][15][16][17][18][19][20] Auer et al. and Hjalmar et al. found the acquisition of trisomy 12 in none of 41 and 2 of 77 CLL cases. 15,16 Chevalier et al. observed additional genomic aberrations with an extended probe set, in 13/31 (42%) CLL cases after a median time of 83 months. 17 There was no association between clonal evolution and CD38 expression or disease progression but the acquisition of del(17p13) was associated with death in 7/11 cases. The VH status was not reported and sequential samples during treatment were not availa...