We look at how one can construct from the data of a dimer model a Lagrangian submanifold in $$(\mathbb {C}^*)^n$$
(
C
∗
)
n
whose valuation projection approximates a tropical hypersurface. Each face of the dimer corresponds to a Lagrangian disk with boundary on our tropical Lagrangian submanifold, forming a Lagrangian mutation seed. Using this we find tropical Lagrangian tori $$L_{T^2}$$
L
T
2
in the complement of a smooth anticanonical divisor of a toric del-Pezzo whose wall-crossing transformations match those of monotone SYZ fibers. An example is worked out for the mirror pair $$(\mathbb {CP}^2{\setminus } E, W), {\check{X}}_{9111}$$
(
CP
2
\
E
,
W
)
,
X
ˇ
9111
. We find a symplectomorphism of $$\mathbb {CP}^2{\setminus } E$$
CP
2
\
E
interchanging $$L_{T^2}$$
L
T
2
and a SYZ fiber. Evidence is provided that this symplectomorphism is mirror to fiberwise Fourier–Mukai transform on $${\check{X}}_{9111}$$
X
ˇ
9111
.