TRPML3 is a H؉ -regulated Ca 2؉ channel that shuttles between intracellular compartments and the plasma membrane. The A419P mutation causes the varitint-waddler phenotype as a result of gain-of-function (GOF). The mechanism by which A419P leads to GOF is not known. Here, we show that the TRPML3 pore is dynamic when conducting Ca 2؉ to change its conductance and permeability, which appears to be mediated by trapping Ca 2؉ within the pore. The pore properties can be restored by strong depolarization or by conducting Na ؉ through the pore. The A419P mutation results in expanded channel pore with altered permeability that limits modulation of the pore by Ca
2؉. This effect is specific for the A419P mutation and is not reproduced by other GOF mutations, including A419G, H283A, and proline mutations in the fifth transmembrane domain. These findings describe a novel mode of a transient receptor potential channel behavior and suggest that pore expansion by the A419P mutation may contribute to the varitint-waddler phenotype.TRPML3 belongs to the TRPML subfamily of the transient receptor potential (TRP) 3 channels superfamily (1, 2). The subfamily consists of TRPML1, mutations in which cause the lysosomal storage disease mucolipidosis type IV (3), TRPML2 and TRPML3. The A419P mutation in the putative fifth transmembrane domain (TMD) of TRPML3 causes the varitint-waddler phenotype that is characterized by pigmentation defect, hearing loss, circling behavior, and embryonic lethality (4, 5).TRPML3 functions as an inwardly rectifying cation channel (6), with high Ca 2ϩ /K ϩ selectivity (7-10) and shuttles between the plasma membrane and intracellular organelles to regulate membrane trafficking (11,12) We (6) and others (8 -10) have shown that the A419P mutation is a GOF mutation that locks TRPML3 in an open conformation. The mechanism by which the A419P mutation leads to GOF is not known. Although elimination of the inhibition of TRPML3 activity by H ϩ e-cyto plays a role in the GOF (7), the A419P mutation may also affect the pore selectivity and conductance. Because proline introduces a kink or a break in ␣-helical transmembrane spans, and the A419G mutation that may disrupt ␣-helical structures results in a similar GOF in TRPML3 as the A419P (6, 9), it was postulated that the GOF by TRPML3(A419P) is caused by destabilization of the fifth TMD helix of TRPML3 (9, 13). However, it is still unclear how the proline-induced destabilization of the fifth TMD affects the behavior of the TRPML3 pore to lead to the GOF.Very little is known of the properties of the TRPML3 pore. As indicated above, the pore of the wild-type (WT) channel shows high Ca 2ϩ /K ϩ and Ca 2ϩ /Cs ϩ selectivity with similar Na ϩ and Ca 2ϩ conductance at isotonic ion concentrations (7). With limited exceptions, ionic selectivity and conductance are considered constant and defining features of ion channels. The best known examples of ion channels with variable permeability are the ionotropic P2X receptors, which undergo time-dependent slow pore expansion subse...