“…Nuclear extracts were prepared as described previously (Von Knethen and Brune, 2001) and an established EMSA method (Weigert et al, 2007) was used. Briefly, 10 g of nuclear protein was incubated for 30 min at room temperature with 2 g of poly(dI-dC) from Amersham Biosciences (Freiburg, Germany), 2 l of buffer D (20 mM HEPES/KOH, 20% glycerol, 100 mM KCl, 0.5 mM EDTA, 0.25% Nonidet P-40, 2 mM dithiothreitol [DTT], and 0.5 mM phenylmethylsulfonyl fluoride [PMSF], pH 7.9), 4 l of buffer F (20% Ficoll-400, 100 mM HEPES/KOH, 300 mM KCl, 10 mM DTT, and 0.5 mM PMSF, pH 7.9), 250 fmol of 5Ј-IRD700-labeled oligonucleotide (Metabion, Planegg-Martinsried, Germany), and in the case of competitive EMSA in addition with 2500 or 25,000 fmol of unlabeled oligonucleotide in a final volume of 20 l. Afterward samples were incubated on ice for 5 min.…”